// ############################## START FUNC ############################################
  // Integers:                  n,m, number_of_atoms
  // Integer matrix:            connection_table
  // String matrix:             atoms_connected_to
  // Strings:                   temp

function neighbours(connection_table)
{

     var n=0;
     var m=0;
// temp is a strictly temporary variable used to avoid long expressions
     var temp="";

// Note that connection_table.length = the length in one dimension
     var number_of_atoms=connection_table.length;
     var atoms_connected_to=new Array(number_of_atoms);

// ************ START LOOP (n) BELOW *********************
       for(n=0;n<number_of_atoms;n++){
       temp="";
// ************ START LOOP (m) BELOW *********************
         for(m=0;m<number_of_atoms;m++){
          if(connection_table[n][m]==1) temp=temp+m+" ";
         }
// ************ END OF LOOP (m) ABOVE ********************
// To chop of the last " ";
        if(temp.length>0) temp=temp.substring(0,temp.length-1);
       atoms_connected_to[n]=temp.split(" ");
       }
// ************ END OF LOOP (n) ABOVE ********************

return atoms_connected_to;

}
// ############################### end func ############################################